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Article

Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation.

Molecular & cellular proteomics : MCP - 1 Jan 2016

Kumar Dhirendra, Yadav Amit Kumar, Jia Xinying, Mulvenna Jason, Dash Debasis

Abstract excerpt

Proteogenomic re-annotation and mRNA splicing information can lead to the discovery of various protein forms for eukaryotic model organisms like rat. However, detection of novel proteoforms using mass spectrometry proteomics data remains a formidable challenge. We developed EuGenoSuite, an open source multiple algorithmic proteomic search tool and utilized it in our in-house integrated transcriptomic-proteomic...

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PMID: 26560066
DOI: 10.1074/mcp.M114.047126
PMCID: PMC4762527

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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