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Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index.

Scientific reports - 11 Jun 2015

Rathinasabapathi Pasupathi, Purushothaman Natarajan, Ramprasad V L, Parani Madasamy

Abstract excerpt

Swarna is a popular cultivated indica rice variety with low glycemic index (GI) but its genetic basis is not known. The whole genome of Swarna was sequenced using Illumina's paired-end technology, and the reads were mapped to the Nipponbare reference genome. Overall, 65,984 non-synonymous SNPs were identified in 20,350 genes, and in silico analysis predicted that 4,847 of them in 2,214 genes may have deleterious...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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Identifiers

PMID: 26068787
DOI: 10.1038/srep11303
PMCID: PMC4464077

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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