Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Automated quantification of neuronal networks and single-cell calcium dynamics using calcium imaging.

Journal of neuroscience methods - 30 Mar 2015

Patel Tapan P, Man Karen, Firestein Bonnie L, Meaney David F

Abstract excerpt

BACKGROUND: Recent advances in genetically engineered calcium and membrane potential indicators provide the potential to estimate the activation dynamics of individual neurons within larger, mesoscale networks (100s-1000+neurons). However, a fully integrated automated workflow for the analysis an...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Access to Information
Share to Neocortex
Share to Neural Pathways

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Optical Imaging

Share to Pattern Recognition, Automated

Share to Periodicity

Share to Single-Cell Analysis

Share to tau Proteins

Source

Open in PubMed Open full text

Identifiers

PMID: 25629800
DOI: 10.1016/j.jneumeth.2015.01.020
PMCID: PMC5553047

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026. Prepared record publication-25629800-2026-09-04.2. Manifest publication-graph-cohort-2026-09-04.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Automated quantification of neuronal networks and single-cell calcium dynamics using calcium imaging.PMID 25629800Read ↗

CaPTure: Calcium PeakToolbox for analysis of <i>in vitro</i> calcium imaging dataSemantic proximity Read ↗

A simple Ca <sup>2+</sup> -imaging approach to neural network analysis in cultured neuronsSemantic proximity Read ↗

An open-source pipeline for calcium imaging and all-optical physiology in human stem cell-derived neuronsSemantic proximity Read ↗

Neuronal hyperactivity in a LRRK2-G2019S cellular model of Parkinson’s DiseaseSemantic proximity Read ↗

In vitro human stem cell derived cultures to monitor calcium signaling in neuronal development and functionSemantic proximity Read ↗

ASTRA: a deep learning algorithm for fast semantic segmentation of large-scale astrocytic networksSemantic proximity Read ↗

Optical spike detection and connectivity analysis with a far-red voltage-sensitive fluorophore reveals changes to network connectivity in development and diseaseSemantic proximity Read ↗

Segment2P: Parameter-free automated segmentation of cellular fluorescent signalsSemantic proximity Read ↗

Time-Resolved Neuronal Network Dynamics Distinguish Pathological States in Organoid ModelsSemantic proximity Read ↗

Unifying community-wide whole-brain imaging datasets enables robust automated neuron identification and reveals determinants of neuron positioning in <i>C. elegans</i>Semantic proximity Read ↗

Spatial quantification of the synaptic activity phenotype across large populations of neurons with Markov random fields.Semantic proximity Read ↗

MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal culturesSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.