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Article

OTG-snpcaller: an optimized pipeline based on TMAP and GATK for SNP calling from ion torrent data.

PloS one - 1 Jan 2014

Zhu Pengyuan, He Lingyu, Li Yaqiao, Huang Wenpan, Xi Feng, Lin Lin, Zhi Qihuan, Zhang Wenwei, Tang Y Tom, Geng Chunyu, Lu Zhiyuan, Xu Xun

Abstract excerpt

Because the new Proton platform from Life Technologies produced markedly different data from those of the Illumina platform, the conventional Illumina data analysis pipeline could not be used directly. We developed an optimized SNP calling method using TMAP and GATK (OTG-snpcaller). This method combined our own optimized processes, Remove Duplicates According to AS Tag (RDAST) and Alignment Optimize Structure...

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Identifiers

PMID: 24824529
DOI: 10.1371/journal.pone.0097507
PMCID: PMC4019570

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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