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JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models.

Bioinformatics (Oxford, England) - 1 May 2013

Long Quan, Zhang Qingrun, Vilhjalmsson Bjarni J, Forai Petar, Seren Ümit, Nordborg Magnus

Abstract excerpt

SUMMARY: We present JAWAMix5, an out-of-core open-source toolkit for association mapping using high-throughput sequence data. Taking advantage of its HDF5-based implementation, JAWAMix5 stores genotype data on disk and accesses them as though stored in main memory. Therefore, it offers a scalable and fast analysis without concerns about memory usage, whatever the size of the dataset. We have implemented eight...

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PMID: 23479353
DOI: 10.1093/bioinformatics/btt122

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

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