Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa.

Applied and environmental microbiology - 1 May 2013

Giebler Julia, Wick Lukas Y, Schloter Michael, Harms Hauke, Chatzinotas Antonis

Abstract excerpt

Sequence and terminal restriction fragment length polymorphism (T-RFLP) analyses revealed multiple alkB gene copies/cell in soil bacterial isolates and an apparently high genetic mobility among various phylogenetic groups. Identifying alkane degraders by alkB terminal restriction fragments (T-RFs) and sequences is strongly biased, as the phylogenetic trees based on 16S rRNA and alkB gene sequences were highly...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteria
Share to Bacterial Proteins

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA, Bacterial

Share to DNA, Ribosomal

Share to Polymorphism, Restriction Fragment Length

Share to RNA, Ribosomal, 16S

Share to Soil Microbiology

Source

Open in PubMed Open full text

Identifiers

PMID: 23455350
DOI: 10.1128/AEM.04028-12
PMCID: PMC3623158

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 4 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Evaluating the assignment of alkB terminal restriction fragments and sequence types to distinct bacterial taxa.PMID 23455350Read ↗

A comparative study of most probable number (MPN)-PCR vs. real-time-PCR for the measurement of abundance and assessment of diversity of alkB homologous genes in soil.Semantic proximity Read ↗

Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR.Semantic proximity Read ↗

Abundance and diversity of n-alkane-degrading bacteria in a forest soil co-contaminated with hydrocarbons and metals: a molecular study on alkB homologous genes.Semantic proximity Read ↗

Terminal restriction fragment length polymorphism (T-RFLP): an emerging method for characterizing diversity among homologous populations of amplification products.Semantic proximity Read ↗

Terminal restriction fragment length polymorphism monitoring of genes amplified directly from bacterial communities in soils and sediments.Semantic proximity Read ↗

Evaluating the microbial diversity of soil samples: methodological innovations.Semantic proximity Read ↗

Phylogeny and diversity of alkane-degrading enzyme gene variants in the laurentian great lakes and western atlantic.Semantic proximity Read ↗

Coupling of denaturing high-performance liquid chromatography and terminal restriction fragment length polymorphism with precise fragment sizing for microbial community profiling and characterization.Semantic proximity Read ↗

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.Semantic proximity Read ↗

An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics.Semantic proximity Read ↗

Residual polymerase activity-induced bias in terminal restriction fragment length polymorphism analysis.Semantic proximity Read ↗

A 'dirty' business: testing the limitations of terminal restriction fragment length polymorphism (TRFLP) analysis of soil fungi.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.