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Optimizing de novo transcriptome assembly and extending genomic resources for striped catfish (Pangasianodon hypophthalmus).

Marine genomics - 1 Oct 2015

Thanh Nguyen Minh, Jung Hyungtaek, Lyons Russell E, Njaci Isaac, Yoon Byoung-Ha, Chand Vincent, Tuan Nguyen Viet, Thu Vo Thi Minh, Mather Peter

Abstract excerpt

Striped catfish (Pangasianodon hypophthalmus) is a commercially important freshwater fish used in inland aquaculture in the Mekong Delta, Vietnam. The culture industry is facing a significant challenge however from saltwater intrusion into many low topographical coastal provinces across the Mekong Delta as a result of predicted climate change impacts. Developing genomic resources for this species can facilitate...

Topics

Animals
Catfishes
Expressed Sequence Tags
Fish Proteins
Gene Expression Regulation
Genomics
Polymorphism, Single Nucleotide
Protein Structure, Tertiary
Salinity
Transcriptome

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 25979246
DOI: 10.1016/j.margen.2015.05.001

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