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Article

High quality SNP calling using Illumina data at shallow coverage.

Bioinformatics (Oxford, England) - 15 Apr 2010

Malhis Nawar, Jones Steven J M

Abstract excerpt

MOTIVATION: Detection of single nucleotide polymorphisms (SNPs) has been a major application in processing second generation sequencing (SGS) data. In principle, SNPs are called on single base differences between a reference genome and a sequence generated from SGS short reads of a sample genome. However, this exercise is far from trivial; several parameters related to sequencing quality, and/or reference genome...

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PMID: 20190250
DOI: 10.1093/bioinformatics/btq092

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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