Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

ACCUSA--accurate SNP calling on draft genomes.

Bioinformatics (Oxford, England) - 15 May 2010

Fröhler Sebastian, Dieterich Christoph

Abstract excerpt

SUMMARY: Next generation sequencing technologies facilitate genome-wide analysis of several biological processes. We are interested in whole-genome genotyping. To our knowledge, none of the existing single nucleotide polymorphism (SNP) callers consider the quality of the reference genome, which is not necessary for high-quality assemblies of well-studied model organisms. However, most genome projects will remain...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genome
Share to Genomics
Share to Polymorphism, Single Nucleotide

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Saccharomyces cerevisiae

Share to Software

Source

Identifiers

PMID: 20363730
DOI: 10.1093/bioinformatics/btq138

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

ACCUSA--accurate SNP calling on draft genomes.PMID 20363730Read ↗

High quality SNP calling using Illumina data at shallow coverage.Semantic proximity Read ↗

A beginners guide to SNP calling from high-throughput DNA-sequencing data.Semantic proximity Read ↗

ACCUSA2: multi-purpose SNV calling enhanced by probabilistic integration of quality scores.Semantic proximity Read ↗

BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.Semantic proximity Read ↗

Comprehensive Survey and Guidance for Building High Quality Genome AssemblySemantic proximity Read ↗

Genotype and SNP calling from next-generation sequencing data.Semantic proximity Read ↗

Kmer2SNP: reference-free SNP calling from raw reads based on matchingSemantic proximity Read ↗

Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects.Semantic proximity Read ↗

inGAP: an integrated next-generation genome analysis pipeline.Semantic proximity Read ↗

Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.Semantic proximity Read ↗

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.Semantic proximity Read ↗

Coverage recommendation for genotyping analysis of highly heterologous species using next-generation sequencing technology.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.