Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Accurate recognition of cis-regulatory motifs with the correct lengths in prokaryotic genomes.

Nucleic acids research - 1 Jan 2010

Li Guojun, Liu Bingqiang, Xu Ying

Abstract excerpt

We present a new computational method for solving a classical problem, the identification problem of cis-regulatory motifs in a given set of promoter sequences, based on one key new idea. Instead of scoring candidate motifs individually like in all the existing motif-finding programs, our method...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Computer Simulation
Share to Escherichia coli K12
Share to Genome, Bacterial

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genomics

Share to Mutation

Share to Promoter Regions, Genetic

Share to Sequence Analysis, DNA

Share to Software

Source

Open in PubMed Open full text

Identifiers

PMID: 19906734
DOI: 10.1093/nar/gkp907
PMCID: PMC2811016

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026. Prepared record publication-19906734-2026-09-02.2. Manifest publication-graph-cohort-2026-09-02.2.

Source receipt: PubMed via Helena Literature Corpus, retrieved 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Accurate recognition of cis-regulatory motifs with the correct lengths in prokaryotic genomes.PMID 19906734Read ↗

Nucleotide variation of regulatory motifs may lead to distinct expression patterns.Semantic proximity Read ↗

The emergence and evolution of gene expression in genome regions replete with regulatory motifs.Semantic proximity Read ↗

The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information.Semantic proximity Read ↗

An Algorithm for Motif Discovery with Iteration on Lengths of Motifs.Semantic proximity Read ↗

MotifMap: a human genome-wide map of candidate regulatory motif sites.Semantic proximity Read ↗

PCRMS: a database of predicted <i>cis</i> -regulatory modules and constituent transcription factor binding sites in genomesSemantic proximity Read ↗

AmalgaMo: flexible DNA motif mergingSemantic proximity Read ↗

Functional characterization of variations on regulatory motifs.Semantic proximity Read ↗

Persistence and plasticity in bacterial gene regulation.Semantic proximity Read ↗

A mutation degree model for the identification of transcriptional regulatory elements.Semantic proximity Read ↗

Finding optimal degenerate patterns in DNA sequences.Semantic proximity Read ↗

Fast motif matching revisited: high-order PWMs, SNPs and indels.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.