Sequence-structure relations of pseudoknot RNA.

doi:10.1186/1471-2105-10-S1-S39

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Article

Sequence-structure relations of pseudoknot RNA.

BMC bioinformatics - 30 Jan 2009

Huang Fenix W D, Li Linda Y M, Reidys Christian M

Abstract excerpt

BACKGROUND: The analysis of sequence-structure relations of RNA is based on a specific notion and folding of RNA structure. The notion of coarse grained structure employed here is that of canonical RNA pseudoknot contact-structures with at most two mutually crossing bonds (3-noncrossing). These structures are folded by a novel, ab initio prediction algorithm, cross, capable of searching all 3-noncrossing RNA...

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Identifiers

PMID: 19208140
DOI: 10.1186/1471-2105-10-S1-S39
PMCID: PMC2648775

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026. Manifest publication-graph-cohort-2026-09-06.1.

Source receipt: pubmed, retrieved 6 Sept 2026.

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