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Article

Marker development for the genetic study of natural variation in Arabidopsis thaliana.

Bioinformatics (Oxford, England) - 15 Nov 2007

Nemri Adnane, Neff Michael M, Burrell Michael, Jones Jonathan D G, Studholme David J

Abstract excerpt

We report AtPRIMER, an application that automates the discovery of new polymorphic markers between ecotypes of Arabidopsis thaliana. On specifying two ecotypes and the genomic region of interest, the script retrieves all corresponding single nucleotide polymorphisms (SNPs) and generates CAPS and/or dCAPS PCR primer sequences. We show that AtPRIMER accurately found specific polymorphic markers for our linkage...

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PMID: 18025007
DOI: 10.1093/bioinformatics/btm501

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CAPS

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

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