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Development of a RAD-Seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding.

PloS one - 1 Jan 2016

Fan Wei, Zong Jie, Luo Zhijing, Chen Mingjiao, Zhao Xiangxiang, Zhang Dabing, Qi Yiping, Yuan Zheng

Abstract excerpt

Rapid and accurate genome-wide marker detection is essential to the marker-assisted breeding and functional genomics studies. In this work, we developed an integrated software, AgroMarker Finder (AMF: http://erp.novelbio.com/AMF), for providing graphical user interface (GUI) to facilitate the recently developed restriction-site associated DNA (RAD) sequencing data analysis in rice. By application of AMF, a total...

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PMID: 26799713
DOI: 10.1371/journal.pone.0147187
PMCID: PMC4723255

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