Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm.

Computational biology and chemistry - 1 Aug 2007

Wang Ying, Feng Enmin, Wang Ruisheng, Zhang Dan

Abstract excerpt

The minimum error correction (MEC) model for haplotype reconstruction is efficient only when the error rate in SNP fragments is low. In order to improve reconstruction rate, additional genotype information is added into MEC model as an extension to MEC model. In this paper, we first establish a new mathematical model for haplotype assembly problem with genotype information. Several properties of the mathematical...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Algorithms
Share to Genotype
Share to Haplotypes

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Models, Genetic

Source

Identifiers

PMID: 17631422
DOI: 10.1016/j.compbiolchem.2007.03.012

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm.PMID 17631422Read ↗

Haplotype reconstruction from SNP fragments by minimum error correction.Semantic proximity Read ↗

A clustering algorithm based on two distance functions for MEC model.Semantic proximity Read ↗

Using genetic algorithm in reconstructing single individual haplotype with minimum error correction.Semantic proximity Read ↗

HapAssembler: a web server for haplotype assembly from SNP fragments using genetic algorithm.Semantic proximity Read ↗

A Markov chain model for haplotype assembly from SNP fragments.Semantic proximity Read ↗

A highly accurate heuristic algorithm for the haplotype assembly problem.Semantic proximity Read ↗

Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments.Semantic proximity Read ↗

A fast and accurate algorithm for diploid individual haplotype reconstruction.Semantic proximity Read ↗

A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors.Semantic proximity Read ↗

Informative SNPs selection based on two-locus and multilocus linkage disequilibrium: criteria of max-correlation and min-redundancy.Semantic proximity Read ↗

Better ILP models for haplotype assembly.Semantic proximity Read ↗

Minimum error correction-based haplotype assembly: Considerations for long read data.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.