Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.

BMC bioinformatics - 23 Mar 2006

Le Texier Vincent, Riethoven Jean-Jack, Kumanduri Vasudev, Gopalakrishnan Chellappa, Lopez Fabrice, Gautheret Daniel, Thanaraj Thangavel Alphonse

Abstract excerpt

BACKGROUND: The three major mechanisms that regulate transcript formation involve the selection of alternative sites for transcription start (TS), splicing, and polyadenylation. Currently there are efforts that collect data & annotation individually for each of these variants. It is important to take an integrated view of these data sets and to derive a data set of alternate transcripts along with consolidated...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Alternative Splicing
Share to Chromosome Mapping

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA Mutational Analysis

Share to Genetic Variation

Share to Polyadenylation

Share to Software

Share to Transcription Factors

Source

Open in PubMed Open full text

Identifiers

PMID: 16556303
DOI: 10.1186/1471-2105-7-169
PMCID: PMC1435940

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.PMID 16556303Read ↗

ASD: the Alternative Splicing Database.Semantic proximity Read ↗

A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants.Semantic proximity Read ↗

Transcriptome sequencing suggests that pre-mRNA splicing counteracts widespread intronic cleavage and polyadenylationSemantic proximity Read ↗

<i>SplAdder</i> : Identification, quantification and testing of alternative splicing events from RNA-Seq dataSemantic proximity Read ↗

APAlyzer: a bioinformatics package for analysis of alternative polyadenylation isoformsSemantic proximity Read ↗

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversitySemantic proximity Read ↗

A unique, consistent identifier for alternatively spliced transcript variants.Semantic proximity Read ↗

A genomic view of alternative splicing.Semantic proximity Read ↗

<i>SpliceImpactR</i> maps alternative RNA processing events driving protein functional diversitySemantic proximity Read ↗

Analysis of alternative polyadenylation from long-read or short-read RNA-seq with LAPASemantic proximity Read ↗

Alternative splicing and cancer: insights, opportunities, and challenges from an expanding view of the transcriptome.Semantic proximity Read ↗

The types and prevalence of alternative splice forms.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.