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Article

Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP.

Bioinformatics (Oxford, England) - 12 Feb 2003

Barker Gary, Batley Jacqueline, O' Sullivan Helen, Edwards Keith J, Edwards David

Abstract excerpt

UNLABELLED: AutoSNP is a program to detect single nucleotide polymorphisms (SNPs) and insertion/deletion polymorphisms (indels) in expressed sequence tag (EST) data. The program uses d2cluster and cap3 to cluster and align EST sequences, and uses redundancy to differentiate between candidate SNPs and sequence errors. Candidate polymorphisms are identified as occurring in multiple reads within an alignment. For...

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PMID: 12584131
DOI: 10.1093/bioinformatics/btf881

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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