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Article

Detection of recombination in DNA multiple alignments with hidden Markov models.

Journal of computational biology : a journal of computational molecular cell biology - 1 Jan 2001

Husmeier D, Wright F

Abstract excerpt

Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets from certain bacteria and viruses due to recombination, a process that leads to the creation of mosaic sequences from different strains and, if undetected, causes systematic errors in phylogenetic tree estimation. In the current work, a...

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PMID: 11571075
DOI: 10.1089/106652701752236214

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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