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DODGE: Automated point source bacterial outbreak detection using cumulative long term genomic surveillance

2024-01-22

Abstract excerpt

<h4>Summary</h4> The reliable and timely recognition of outbreaks is a key component of public health surveillance for foodborne diseases. Whole genome sequencing (WGS) offers high resolution typing of foodborne bacterial pathogens and facilitates the accurate detection of outbreaks. This detection relies on grouping WGS data into clusters at an appropriate genetic threshold, however, methods and tools for selecti...

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Literature Corpus work: fcd6addd-f32f-534f-b5c9-caad99f6f0ec
DOI: 10.1101/2024.01.21.24301506

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