Article

Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence data

2016-04-16

Abstract excerpt

We present user-friendly and adaptable software to provide biologists, clinical researchers and possibly diagnostic clinicians with the ability to robustly detect and reconstruct viral genomes from complex deep sequence datasets. A set of modular bioinformatic tools and workflows was implemented as the Metavisitor package in the Galaxy framework. Using the graphical Galaxy workflow editor, users with minimal compu...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 40bc14e6-52a9-5716-b39d-80d4ec466944
DOI: 10.1101/048983

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Metavisitor, a suite of Galaxy tools for simple and rapid detection and discovery of viruses in deep sequence dataDOI 10.1101/048983Read

ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomesSemantic proximity Read

Fast Virome Explorer: A Pipeline for Virus and Phage Identification and Abundance Profiling in Metagenomics DataSemantic proximity Read

CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysisSemantic proximity Read

VirAmp: a galaxy-based viral genome assembly pipelineSemantic proximity Read

LazypipeX: Customizable Virome Analysis Pipeline Enabling Fast and Sensitive Virus Discovery from NGS dataSemantic proximity Read

A Computational Toolset for Rapid Identification of SARS-CoV-2, other Viruses, and Microorganisms from Sequencing DataSemantic proximity Read

INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillanceSemantic proximity Read

Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samplesSemantic proximity Read

MG-Digger: An Automated Pipeline to Search for Giant Virus-Related Sequences in MetagenomesSemantic proximity Read

Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and DiscoverySemantic proximity Read

VIGA: an one-stop tool for eukaryotic Virus Identification and Genome Assembly from next-generation-sequencing dataSemantic proximity Read

VirMake: a flexible and user-friendly pipeline for viral taxonomic and functional characterisation from shotgun metagenomic sequencing dataSemantic proximity Read