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Article

A novel alignment-free method for HIV-1 subtype classification.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases - 1 Jan 2020

He Lily, Dong Rui, He Rong Lucy, Yau Stephen S-T

Abstract excerpt

HIV-1 is the most common and pathogenic strain of human immunodeficiency virus consisting of many subtypes. To study the difference among HIV-1 subtypes in infection, diagnosis and drug design, it is important to identify HIV-1 subtypes from clinical HIV-1 samples. In this work, we propose an effective numeric representation called Subsequence Natural Vector (SNV) to encode HIV-1 sequences. Using the...

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

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PMID: 31683009
DOI: 10.1016/j.meegid.2019.104080

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