Article

Viola: a structural variant signature extractor with user-defined classifications

2021-04-01

Abstract excerpt

<h4>Summary</h4> Here, we present Viola, a Python package that provides structural variant (SV; large scale genome DNA variations that can result in disease, e.g., cancer) signature analytical functions and utilities for custom SV classification, merging multi-SV-caller output files, and SV annotation. We demonstrate that Viola can extract biologically meaningful SV signatures from publicly available SV data for...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: e69dda13-e260-50c3-9e15-1e3101217db2
DOI: 10.1101/2021.03.31.437648

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Viola: a structural variant signature extractor with user-defined classificationsDOI 10.1101/2021.03.31.437648Read

pyCancerSig: subclassifying human cancer with comprehensive single nucleotide, structural and microsatellite mutational signature deconstruction from whole genome sequencingSemantic proximity Read

pyCancerSig: subclassifying human cancer with comprehensive single nucleotide, structural and microsatellite mutational signature deconstruction from whole genome sequencing.Semantic proximity Read

Accurate and sensitive mutational signature analysis with MuSiCalSemantic proximity Read

Accurate and sensitive mutational signature analysis with MuSiCal.Semantic proximity Read

Mining Thousands of Genomes to Classify Somatic and Pathogenic Structural VariantsSemantic proximity Read

PULPO: Pipeline of understanding large-scale patterns of oncogenomic signaturesSemantic proximity Read

Sigflow: an automated and comprehensive pipeline for cancer genome mutational signature analysis.Semantic proximity Read

Tools for annotation and comparison of structural variationSemantic proximity Read

Sigflow: an automated and comprehensive pipeline for cancer genome mutational signature analysisSemantic proximity Read

PULPO: pipeline of understanding large-scale patterns of oncogenomic signatures.Semantic proximity Read

Personal Cancer Genome Reporter: variant interpretation report for precision oncologySemantic proximity Read

svclassify: a method to establish benchmark structural variant callsSemantic proximity Read