Article

Rapid inference of direct interactions in large-scale ecological networks from heterogeneous microbial sequencing data

2018-08-13

Abstract excerpt

The recent explosion of metagenomic sequencing data opens the door towards the modeling of microbial ecosystems in unprecedented detail. In particular, co-occurrence based prediction of ecological interactions could strongly benefit from this development. However, current methods fall short on several fronts: univariate tools do not distinguish between direct and indirect interactions, resulting in excessive false...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: e3fe74c8-6f69-59ca-91f4-f1921ecfba88
DOI: 10.1101/390195

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Rapid inference of direct interactions in large-scale ecological networks from heterogeneous microbial sequencing dataDOI 10.1101/390195Read

BEEM-Static: Accurate inference of ecological interactions from cross-sectional metagenomic dataSemantic proximity Read

MCSPACE: inferring microbiome spatiotemporal dynamics from high-throughput co-localization dataSemantic proximity Read

MicroPhenoDB Associates Metagenomic Data with Pathogenic Microbes, Microbial Core Genes, and Human Disease PhenotypesSemantic proximity Read

GutMicroNet: an interactive platform for gut microbiome interaction explorationSemantic proximity Read

MicroPhenoDB Associates Metagenomic Data with Pathogenic Microbes, Microbial Core Genes, and Human Disease Phenotypes.Semantic proximity Read

Meta-analysis of Microbiome Association Networks Reveal Patterns of Dysbiosis in Diseased MicrobiomesSemantic proximity Read

KDiamend: a package for detecting key drivers in a molecular ecological network of disease.Semantic proximity Read

Multivariable Association Discovery in Population-scale Meta-omics StudiesSemantic proximity Read

Identifying High-Dimensional Genomic Factors Modulating Biological Networks Across Multi-Omics DataSemantic proximity Read

Microbial dynamics inference at ecosystem-scaleSemantic proximity Read

MicrobioLink: An integrated computational pipeline to infer functional effects of microbiome-host interactionsSemantic proximity Read

Deep Learning Transforms Phage-Host Interaction Discovery from Metagenomic DataSemantic proximity Read