Article

BEEM-Static: Accurate inference of ecological interactions from cross-sectional metagenomic data

2020-11-24

Abstract excerpt

<h4>Motivation</h4> The structure and function of diverse microbial communities is underpinned by ecological interactions that remain uncharacterized. With rapid adoption of metagenomic sequencing for studying microbiomes, data-driven inference of microbial interactions based on abundance correlations is widely used, but with the drawback that ecological interpretations may not be possible. Leveraging cross-secti...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 7cb8dc09-3e03-57d8-8e73-1cb0f8583019
DOI: 10.1101/2020.11.23.394999

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

BEEM-Static: Accurate inference of ecological interactions from cross-sectional metagenomic dataDOI 10.1101/2020.11.23.394999Read

System Biology Modeling with Compositional Microbiome Data Reveals Personalized Gut Microbial Dynamics and Keystone SpeciesSemantic proximity Read

Rapid inference of direct interactions in large-scale ecological networks from heterogeneous microbial sequencing dataSemantic proximity Read

Mapping the ecological networks of microbial communitiesSemantic proximity Read

The MTIST platform: a microbiome time series inference standardized test simulation, dataset, and scoring systemsSemantic proximity Read

Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal MicrobiotaSemantic proximity Read

Microbial dynamics inference at ecosystem-scaleSemantic proximity Read

Microbial network inference for longitudinal microbiome studies with LUPINESemantic proximity Read

The MTIST platform: a microbiome time series inference standardized testSemantic proximity Read

Predicting microbiome compositions from species assemblages through deep learningSemantic proximity Read

Mobile microbiome networks across spatiotemporal gradientsSemantic proximity Read

Deciphering microbial interactions in synthetic human gut microbiome communitiesSemantic proximity Read

DeepBioSim: Efficient and Versatile Methods for Microbiome Data Simulation with Minimal Statistical AssumptionsSemantic proximity Read