Article

Benchmarking Variant Identification Tools for Plant Diversity Discovery

2019-08-14

Abstract excerpt

<h4>Background: </h4> The ability to accurately and comprehensively identify genomic variations is critical for plant studies utilizing high-throughput sequencing. Most bioinformatics tools for processing next-generation sequencing data were originally developed and tested in human studies, raising questions as to their efficacy for plant research. A detailed evaluation of the entire variant calling pipeline, incl...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: e0fb5c93-e749-5553-9ecb-0f37894ab2f1
DOI: 10.21203/rs.2.9666/v2

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Benchmarking Variant Identification Tools for Plant Diversity DiscoveryDOI 10.21203/rs.2.9666/v2Read

Comparison of read mapping and variant calling tools for the analysis of plant NGS dataSemantic proximity Read

Genetic Diversity Assessment in Plants from Reduced Representation Sequencing Data.Semantic proximity Read

Evaluation of variant calling tools for large plant genome re-sequencing.Semantic proximity Read

A comprehensive benchmark of graph-based genetic variant genotyping algorithms on plant genomes for creating an accurate ensemble pipelineSemantic proximity Read

Somatic mutation detection: a critical evaluation through simulations and reanalyses in oaksSemantic proximity Read

Advancements in molecular marker technologies and their applications in diversity studies.Semantic proximity Read

The vegetable SNP database: An integrated resource for plant breeders and scientists.Semantic proximity Read

Benchmarking long-read variant calling in diploid and polyploid genomes: insights from human and plants.Semantic proximity Read

Benchmarking long-read variant calling in diploid and polyploid genomes: insights from human and plantsSemantic proximity Read

A comprehensive benchmark of graph-based genetic variant genotyping algorithms on plant genomes for creating an accurate ensemble pipeline.Semantic proximity Read

Population-level super-pangenome reveals genome evolution and empowers precision breeding in watermelon.Semantic proximity Read

Plant-ImputeDB: an integrated multiple plant reference panel database for genotype imputation.Semantic proximity Read