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Article

Evaluation of variant calling tools for large plant genome re-sequencing.

BMC bioinformatics - 17 Aug 2020

Yao Zhen, You Frank M, N'Diaye Amidou, Knox Ron E, McCartney Curt, Hiebert Colin W, Pozniak Curtis, Xu Wayne

Abstract excerpt

BACKGROUND: Discovering single nucleotide polymorphisms (SNPs) from agriculture crop genome sequences has been a widely used strategy for developing genetic markers for several applications including marker-assisted breeding, population diversity studies for eco-geographical adaption, genotyping crop germplasm collections, and others. Accurately detecting SNPs from large polyploid crop genomes such as wheat is...

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PMID: 32807073
DOI: 10.1186/s12859-020-03704-1
PMCID: PMC7430858

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