A comprehensive benchmark of graph-based genetic variant genotyping algorithms on plant genomes for creating an accurate ensemble pipeline

Abstract excerpt

<h4>Background</h4> Although sequencing technologies have boosted the measurement of the sequencing diversity of plant crops, it remains challenging to accurately genotype millions of genetic variants, especially structural variations, with only short reads. In recent years, many graph-based variation genotyping methods have been developed to address this issue and tested for human genomes, however, their perform...

Topics

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• Algorithms
• Benchmarking
• Genome, Plant
• Genomics
• Genotype
• Genotyping Techniques
• High-Throughput Nucleotide Sequencing
• Sequence Analysis, DNA

Identifiers and source

Literature Corpus work

761e0772-2a97-55d8-beaa-88197add035b

DOI

10.1101/2023.07.19.549631