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cuBayes: GPU accelerated FreeBayes that achieves 1-minute whole-genome SNV calling while maintaining algorithmic semantics

2026-06-16

Abstract excerpt

<h4>ABSTRACT</h4> Next-generation sequencing now produces whole-genome data in hours, but downstream variant calling remains a multi-hour to multi-day bottleneck that excludes genomic analysis from time-critical clinical settings. GPU acceleration offers a natural path forward — variant calling is inherently parallelizable across genomic positions — yet open-source infrastructure for porting existing algorithms t...

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Literature Corpus work: d24c55fd-2874-5a2e-b1ab-f8427d0e013d
DOI: 10.64898/2026.06.12.731910

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