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GeNePi: a graphics processing unit enhanced next-generation bioinformatics pipeline for whole-genome sequencing analysis.

Briefings in bioinformatics - 7 Jan 2026

Marangoni Stefano, Furia Federica, Charrance Debora, Fant Agata, Di Dio Salvatore, Trova Sara, Spirito Giovanni, Musacchia Francesco, Coppe Alessandro, Gustincich Stefano, Vecchi Manuela, Landuzzi Fabio, Cavalli Andrea

Abstract excerpt

Next-generation sequencing (NGS) has revolutionized genome biology by enabling rapid whole-genome sequencing (WGS) and driving its adoption in research and clinical settings. However, the high-throughput nature of NGS and the complexity of downstream analyses demand robust computational solutions. We present GeNePi, a modular bioinformatic pipeline for efficient and accurate analysis of WGS short paired-end...

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PMID: 41581117
DOI: 10.1093/bib/bbag001
PMCID: PMC12832024

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