Article

Cross-kingdom phenotype annotations for 35,856 species generated with a web-search-enabled language model

2026-07-03

Abstract excerpt

<title>Abstract</title> <p>Standardized organismal trait matrices support comparative biology, macroecology and conservation, but broad taxonomic coverage is difficult to obtain by manual curation or corpus-bound extraction. This Data Descriptor presents a cross-kingdom phenotype dataset generated by a web-search-enabled large language model embedded in a scripted annotation pipeline. The dataset contains 7,027,7...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: ce690624-8abe-5ae0-820c-844256b0426c
DOI: 10.21203/rs.3.rs-10220777/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Cross-kingdom phenotype annotations for 35,856 species generated with a web-search-enabled language modelDOI 10.21203/rs.3.rs-10220777/v1Read

The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomicsSemantic proximity Read

The Unified Phenotype Ontology : a framework for cross-species integrative phenomics.Semantic proximity Read

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants.Semantic proximity Read

Transforming the study of organisms: Phenomic data models and knowledge bases.Semantic proximity Read

A synthesis of bacterial and archaeal phenotypic trait data.Semantic proximity Read

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species.Semantic proximity Read

Finding our way through phenotypes.Semantic proximity Read

Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies.Semantic proximity Read

PhenomicDB: a new cross-species genotype/phenotype resource.Semantic proximity Read

The Xenopus Phenotype Ontology: bridging model organism phenotype data to human health and developmentSemantic proximity Read

Phenex: ontological annotation of phenotypic diversity.Semantic proximity Read

Comparative assessment of large language models for microbial phenotype assignment.Semantic proximity Read