Article

Sharq, A versatile preprocessing and QC pipeline for Single Cell RNA-seq

2018-01-19

Abstract excerpt

Despite the meteoric rise of single cell RNA-seq, only a few preprocessing pipelines exist that are able to perform all steps from the original fastq files to a gene expression table ready for further analysis. Here we present Sharq , a versatile preprocessing pipeline designed to work with plate-based 3’-end protocols that include Unique Molecular Identifiers (UMIs). Sharq performs stringent step-wise trimming...

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Literature Corpus work: c8206ac6-c4cf-5e70-bcc0-c92c2c9af842
DOI: 10.1101/250811

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