Article

VarStack: a Web Tool for Data Retrieval to Interpret Somatic Variants in Cancer

2020-03-11

Abstract excerpt

<h4>Background and objective</h4> Advances in tumor genome sequencing created an urgent need for bioinformatics tools to support the interpretation of the clinical significance of the variants detected. VarStack is a web tool which is a base to retrieve somatic variant data in cancer from existing databases. <h4>Methods</h4> VarStack incorporates data from several publicly available databases and presents them w...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: bedcdae6-0447-5ec9-bebd-0dc53fad8871
DOI: 10.1101/2020.03.10.985952

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

VarStack: a Web Tool for Data Retrieval to Interpret Somatic Variants in CancerDOI 10.1101/2020.03.10.985952Read

VarStack2-an interactive web tool for somatic variant interpretation in cancer.Semantic proximity Read

CACSV: a computational web-sever that provides classification for cancer somatic genetic variants from different tissues.Semantic proximity Read

iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data.Semantic proximity Read

Cycledash: a web application for the interactive analysis and exploration of variantsSemantic proximity Read

CRAVAT 4: Cancer-Related Analysis of Variants ToolkitSemantic proximity Read

Genome Nexus: A Comprehensive Resource for the Annotation and Interpretation of Genomic Variants in Cancer.Semantic proximity Read

The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website.Semantic proximity Read

CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasetsSemantic proximity Read

Orchid: a novel management, annotation and machine learning framework for analyzing cancer mutations.Semantic proximity Read

VariantAlert: A web-based tool to notify updates in genetic variant annotations.Semantic proximity Read

CIViCutils: Matching and downstream processing of clinical annotations from CIViCSemantic proximity Read

VAReporter: variant reporter for cancer research of massive parallel sequencing.Semantic proximity Read