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Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review

21 Jun 2017

Abstract excerpt

In recent years, whole-genome sequencing (WGS) has been perceived as a technology with the potential to revolutionise clinical microbiology. Herein, we reviewed the literature on the use of WGS for the most commonly encountered pathogens in clinical microbiology laboratories: Escherichia coli and other Enterobacteriaceae, Staphylococcus aureus and coagulase-negative staphylococci, streptococci and enterococci,...

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PMID: 28639162
DOI: 10.1007/s10096-017-3024-6

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