Article

Compendiums of Cancer Transcriptome for Machine Learning Applications

2018-06-22

Abstract excerpt

<h4>Background</h4> There exist massive transcriptome profiles in the form of microarray, enabling reuse. The challenge is that they are processed with diverse platforms and preprocessing tools, requiring considerable time and informatics expertise for cross-dataset or cross-cancer analyses. If there exists a single, integrated data source consisting of thousands of samples, similar to TCGA, data-reuse will be fa...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: ba277e58-044a-54ea-a269-cf21d80c4cf8
DOI: 10.1101/353698

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Compendiums of Cancer Transcriptome for Machine Learning ApplicationsDOI 10.1101/353698Read

MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene SignatureSemantic proximity Read

Generalizable transcriptome-based tumor malignant level evaluation and molecular subtyping towards precision oncology.Semantic proximity Read

Machine learning for pan-cancer classification based on RNA sequencing dataSemantic proximity Read

Integrative deep-sequencing analysis of cancer samples: discoveries and clinical challenges.Semantic proximity Read

BEST: a web application for comprehensive biomarker exploration on large-scale data in solid tumorsSemantic proximity Read

Transcriptome Analysis of Archived Tumor Tissues by Visium, GeoMx DSP, and Chromium Methods Reveals Inter- and Intra-Patient HeterogeneitySemantic proximity Read

Convergent architecture of the transcriptome in human cancerSemantic proximity Read

An integrated analysis of the cancer genome atlas data discovers a hierarchical association structure across thirty three cancer typesSemantic proximity Read

SurvivalML: an integrative platform for the discovery and exploration of prognostic models in multi-center cancer cohortsSemantic proximity Read

Annotated Compendium of 102 Breast Cancer Gene-Expression DatasetsSemantic proximity Read

A Pan-Cancer Immunogenomic Atlas for Immune Checkpoint Blockade ImmunotherapySemantic proximity Read

AI enabled exome and transcriptome liquid biopsy platform spanning the continuum of care in oncologySemantic proximity Read