Article

BEST: a web application for comprehensive biomarker exploration on large-scale data in solid tumors

2022-10-24

Abstract excerpt

<h4>Summary</h4> Data mining from RNA-seq or microarray data has become an essential part of cancer biomarker exploration. Certain existing web servers are valuable and broadly utilized, but the meta-analysis of multiple datasets is absent. Most web servers only contain tumor samples from the TCGA database with only one cohort for each cancer type, which also means that the analysis results mainly derived from a...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: eb4b092e-0318-5d75-a770-bb78bb8dc6fb
DOI: 10.1101/2022.10.21.513300

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

BEST: a web application for comprehensive biomarker exploration on large-scale data in solid tumorsDOI 10.1101/2022.10.21.513300Read

Comprehensive analysis of prognosis markers with molecular features derived from pan-cancer whole-genome sequences.Semantic proximity Read

IOBR: Multi-omics Immuno-Oncology Biological Research to decode tumor microenvironment and signaturesSemantic proximity Read

TNMplot.com: a web tool for the comparison of gene expression in normal, tumor and metastatic tissuesSemantic proximity Read

Compendiums of Cancer Transcriptome for Machine Learning ApplicationsSemantic proximity Read

Bioinformatics tools and resources for cancer and application.Semantic proximity Read

Pan-cancer evaluation of gene expression and somatic alteration data for cancer prognosis predictionSemantic proximity Read

CHARTS: A web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq datasetsSemantic proximity Read

IOBR2: Multidimensional Decoding Tumor Microenvironment for Immuno-Oncology ResearchSemantic proximity Read

CBioProfiler: a web and standalone pipeline for cancer biomarker and subtype characterizationSemantic proximity Read

Reboot: a straightforward approach to identify genes and splicing isoforms associated with cancer patient prognosisSemantic proximity Read

TIMEDB: tumor immune micro-environment cell composition database with automatic analysis and interactive visualizationSemantic proximity Read

MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene SignatureSemantic proximity Read