Article

ExTraMapper: Exon- and Transcript-level mappings for orthologous gene pairs

2018-03-06

Abstract excerpt

<h4>ABSTRACT</h4> Access to large-scale genomics and transcriptomics data from various tissues and cell lines allowed the discovery of wide-spread alternative splicing events and alternative promoter usage in mammalians. However, evolutionary studies primarily focus on gene-level orthology relationships, which hinders the importance of transcript-level diversity. Between human and mouse, gene-level orthology is c...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: add10e2e-5ced-535b-8e05-a18f5be8380f
DOI: 10.1101/277723

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

ExTraMapper: Exon- and Transcript-level mappings for orthologous gene pairsDOI 10.1101/277723Read

IsoAtlas: Visual interpretation of known and novel transcript isoforms using population-scale long-read evidenceSemantic proximity Read

Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat.Semantic proximity Read

AdaLiftOver: High-resolution identification of orthologous regulatory elements with adaptive liftOverSemantic proximity Read

The Paipu framework enables creation of a large-scale mammalian cancer transcriptomics atlasSemantic proximity Read

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversitySemantic proximity Read

The GENCODE CLS project: massively expanding the lncRNA catalog through capture long-read RNA sequencingSemantic proximity Read

ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer.Semantic proximity Read

Universal alternative splicing of noncoding exonsSemantic proximity Read

Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons.Semantic proximity Read

Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two ExonsSemantic proximity Read

ExonSkipDB: functional annotation of exon skipping event in human.Semantic proximity Read

Accurate, comprehensive gene annotation and ortholog identification across thousands of vertebrate genomes with TOGA2Semantic proximity Read