Article

Metagenomic Noncoding RNA Profiling and Biomarker Discovery

2020-09-28

Abstract excerpt

Noncoding RNA plays important regulatory and functional roles in microorganisms, such as gene expression regulation, signaling, protein synthesis, and RNA processing. Given its essential role in microbial physiology, it is natural to question whether we can use noncoding RNAs as biomarkers to distinguish among environments under different biological conditions, such as those between healthy versus disease status....

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: a6e1f1f3-d26a-554e-be58-869206a054c6
DOI: 10.1101/2020.09.27.315507

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Metagenomic Noncoding RNA Profiling and Biomarker DiscoveryDOI 10.1101/2020.09.27.315507Read

Exploring high-quality microbial genomes by assembling short-reads with long-range connectivitySemantic proximity Read

Exploring high-quality microbial genomes by assembling short-reads with long-range connectivitySemantic proximity Read

Meta-analysis of the human gut microbiome uncovers shared and distinct microbial signatures between diseasesSemantic proximity Read

Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s diseaseSemantic proximity Read

Gene-centric metagenomic analyses reveal microbiome functional insights into diseasesSemantic proximity Read

Comparative metagenomics using pan-metagenomic graphsSemantic proximity Read

MetaTrass: High-quality metagenome assembly on the human gut microbiome by co-barcoding sequencing readsSemantic proximity Read

MetaCompass: Reference-guided Assembly of MetagenomesSemantic proximity Read

Carnelian: alignment-free functional binning and abundance estimation of metagenomic readsSemantic proximity Read

Euktect: Enhanced Eukaryotic Sequence Detection and Classification in Metagenomes via the DNA Language ModelSemantic proximity Read

Highly accurate metagenome-assembled genomes from human gut microbiota using long-read assembly, binning, and consolidation methodsSemantic proximity Read

Benchmarking <i>de novo</i> assembly methods on metagenomic sequencing dataSemantic proximity Read