Back to search

Article

Understanding drivers of phylogenetic clustering and terminal branch lengths distribution in epidemics of <i>Mycobacterium tuberculosis</i>

2022-01-03

Abstract excerpt

Detecting factors associated with transmission is important to understand disease epidemics, and to design effective public health measures. Clustering and terminal branch lengths (TBL) analyses are commonly applied to genomic data sets of Mycobacterium tuberculosis (MTB) to identify sub-populations with increased transmission. Here, I used a simulation-based approach to investigate what epidemiological processes...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work
990ad350-75a6-5e01-a8a2-6cfd485b5412
DOI
10.1101/2022.01.03.474767
Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest
Interactive article relationship graphSelect a related publication card to move it into the centre and load its closest explainable connections. Solid lines are source-backed structured connections. Dashed lines are semantic discovery signals and are not scientific evidence.
Understanding drivers of phylogenetic clustering and terminal branch lengths distribution in epidemics of <i>Mycobacterium tuberculosis</i>DOI 10.1101/2022.01.03.474767
Onset of infectiousness explains differences in transmissibility across <i>Mycobacterium tuberculosis</i> lineagesSemantic proximity
Population-based sequencing of <i>Mycobacterium tuberculosis</i> reveals how current population dynamics are shaped by past epidemicsSemantic proximity
The molecular clock of <i>Mycobacterium tuberculosis</i>Semantic proximity
Comparing transmission reconstruction models with <i>Mycobacterium tuberculosis</i> whole genome sequence dataSemantic proximity
Onset of infectiousness explains differences in transmissibility across Mycobacterium tuberculosis lineages.Semantic proximity
Phylodynamic analysis reveals disparate transmission dynamics of<i>Mycobacterium tuberculosis</i>-complex lineages in BotswanaSemantic proximity
Unravelling the population structure and transmission patterns of <i>Mycobacterium tuberculosis</i> in Mozambique, a high TB/HIV burden countrySemantic proximity
Multiple merger genealogies in outbreaks of <i>Mycobacterium tuberculosis</i>Semantic proximity
Comparing Mycobacterium tuberculosis transmission reconstruction models from whole genome sequence data.Semantic proximity
Sampling Bias in the Molecular Epidemiology of TuberculosisSemantic proximity
Biological causes and impacts of rugged tree landscapes in phylodynamic inferenceSemantic proximity
Relating phylogenetic trees to transmission trees of infectious disease outbreaks.Semantic proximity
Select a neighboring publication to make it the new centre.