Article

REDInet: a TCN-based classifier for A-to-I RNA editing detection harnessing million known events

2024-09-10

Abstract excerpt

<title>Abstract</title> <p>A-to-I RNA editing detection is still a challenging task. Current bioinformatics tools rely on empirical filters and WGS/WES data to remove background noise, sequencing errors, and artifacts. Sometimes they make use of cumbersome and time-consuming computational procedures. We present here REDInet, a TCN-based Deep Learning algorithm, to profile RNA editing in human RNAseq data. It has...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 853afceb-00a4-5d7d-aaba-7d37e18cd8a0
DOI: 10.21203/rs.3.rs-4900829/v1

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

REDInet: a TCN-based classifier for A-to-I RNA editing detection harnessing million known eventsDOI 10.21203/rs.3.rs-4900829/v1Read

Exploring functional conservation <i>in silico</i> : a new machine learning approach to RNA-editingSemantic proximity Read

DEMINING: A deep learning model embedded framework to distinguish RNA editing from DNA mutations in RNA sequencing data.Semantic proximity Read

A Deep-learning based RNA-seq Germline Variant CallerSemantic proximity Read

DeNovoCNN: A deep learning approach to <i>de novo</i> variant calling in next generation sequencing dataSemantic proximity Read

RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication.Semantic proximity Read

OPED: an optimal prime editing guide RNA designer based on deep learning and transfer learningSemantic proximity Read

A Global Assessment of the Transcription-Dependent Single Nucleotide Variants Relies on the Characteristics of RNA-Sequencing Technologies.Semantic proximity Read

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing.Semantic proximity Read

RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.Semantic proximity Read

RNA editing in the human ENCODE RNA-seq data.Semantic proximity Read

Systematic benchmarking of methods to analyze RNA editing in single-cell transcriptomesSemantic proximity Read

Predicting prime editing efficiency and product purity by deep learning.Semantic proximity Read