Article

Phylodynamic inference of the contribution of transmission routes in infectious disease outbreaks

2025-06-20

Abstract excerpt

Understanding which types of contact drive pathogen transmission is critical for outbreak control. Traditionally, inference of transmission events with contact tracing or network analyses is used to identify high-risk contacts. Inference based on genetic data might offer higher accuracy on identifying the true events, but is rarely used to evaluate the contribution of different types of contact to transmission. We...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 8316a456-c7ca-54e1-82ee-1c2d94234d3d
DOI: 10.1101/2025.06.17.25329759

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Phylodynamic inference of the contribution of transmission routes in infectious disease outbreaksDOI 10.1101/2025.06.17.25329759Read

A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farmsSemantic proximity Read

Characterising contact in disease outbreaks via a network model of spatial-temporal proximitySemantic proximity Read

Developing methodologies and software for Bayesian inference of transmission trees from epidemiological and genetic dataSemantic proximity Read

Phylodynamic assessment of SNP distances from whole genome sequencing for determining Mycobacterium tuberculosis transmissionSemantic proximity Read

EpiLink: a simulation-based compatibility model for genomic transmission clustering in infectious disease surveillanceSemantic proximity Read

Estimating the Relative Probability of Direct Transmission between Infectious Disease PatientsSemantic proximity Read

New method to reconstruct phylogenetic and transmission trees with sequence data from infectious disease outbreaksSemantic proximity Read

Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data.Semantic proximity Read

A framework for leveraging animal movement to understand spatio-temporal disease dynamicsSemantic proximity Read

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks.Semantic proximity Read

ScTree: Scalable and robust mechanistic integration of epidemiological and genomic data for transmission tree inferenceSemantic proximity Read

Comparing Mycobacterium tuberculosis transmission reconstruction models from whole genome sequence data.Semantic proximity Read