Article

A Gene Set Foundation Model Pre-Trained on a Massive Collection of Diverse Gene Sets

2025-06-02

Abstract excerpt

<h4>ABSTRACT</h4> Trained with large datasets, foundation models can capture complex patterns within these datasets to create embeddings that can be used for a variety of useful applications. Here we created a gene set foundation model that was trained on a massive collection of unlabeled gene sets from two databases: Rummagene and RummaGEO. Rummagene automatically extracts gene sets from supplemental tables of p...

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Literature Corpus work: 73976311-ca5f-51e9-b775-ace8a7e5a8ff
DOI: 10.1101/2025.05.30.657124

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