Article

A compositional reanalysis of poly(A)-selected RNA-seq reveals tank effects but no survival-associated differences

2025-04-15

Abstract excerpt

Poly(A)-selected RNA-seq datasets are routinely generated in aquaculture research, yet the microbial information contained in unmapped reads is seldom explored due to the low abundance of nonhost transcripts and concerns about contamination. In this study, we repurposed Atlantic salmon gill RNA-seq data to assess whether meaningful microbial signals can be recovered using a contamination-aware and compositionally...

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Literature Corpus work: 7384422f-9880-5041-a3e8-19d4f15c4448
DOI: 10.1101/2025.04.15.648526

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