Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.

Genes - 13 Apr 2021

García-López Rodrigo, Cornejo-Granados Fernanda, Lopez-Zavala Alonso A, Cota-Huízar Andrés, Sotelo-Mundo Rogerio R, Gómez-Gil Bruno, Ochoa-Leyva Adrian

Abstract excerpt

The interplay between shrimp immune system, its environment, and microbiota contributes to the organism's homeostasis and optimal production. The metagenomic composition is typically studied using 16S rDNA profiling by clustering amplicon sequences into operational taxonomic units (OTUs) and, more recently, amplicon sequence variants (ASVs). Establish the compatibility of the taxonomy, α, and β diversity...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacteria
Share to Computational Biology

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA, Ribosomal

Share to Gastrointestinal Microbiome

Share to High-Throughput Nucleotide Sequencing

Share to Microbiota

Share to Penaeidae

Share to RNA, Ribosomal, 16S

Source

Open in PubMed Open full text

Identifiers

PMID: 33924545
DOI: 10.3390/genes12040564
PMCID: PMC8070570

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.PMID 33924545Read ↗

Diversity and composition of microbial communities in shrimp ponds sediments: A metagenomic approachSemantic proximity Read ↗

Shrimp disease progression increases the gut bacterial network complexity and abundances of keystone taxaSemantic proximity Read ↗

Characteristics of intestinal microbiota in the Pacific white shrimp Litopenaeus vannamei differing growth performances in the marine cultured environmentSemantic proximity Read ↗

Microbiome Analysis Using 16S Amplicon Sequencing: From Samples to ASVs.Semantic proximity Read ↗

Dysbiosis of the shrimp (Penaeus monodon) gut microbiome with AHPND outbreaks revealed by 16S rRNA metagenomics analysisSemantic proximity Read ↗

Strain-specific changes in the gut microbiota profiles of the white shrimp Litopenaeus vannamei in response to cold stressSemantic proximity Read ↗

A species-level identification pipeline for human gut microbiota based on the V3-V4 regions of 16S rRNASemantic proximity Read ↗

The effects of Bdellovibrio and like organisms (BALOs) and Lactobacillus salivarius on changes in gut microbial biodiversity and their potential role on Shrimp (Litopenaeus vannamei) PostlarvaeSemantic proximity Read ↗

Microecological Koch's postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome.Semantic proximity Read ↗

Gut eukaryotic disease-discriminatory taxa are indicative of Pacific white shrimp (Litopenaeus vannamei) white feces syndromeSemantic proximity Read ↗

Bacterial diversity and community composition in the gut and rearing water of Pacific White shrimp Penaeus vannamei during an outbreak of white feces diseaseSemantic proximity Read ↗

Host Genome Drives the Diversity, Richness, and Beneficial Microbes in the Shrimp Microbiota: A Hologenome PerspectiveSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.