Article

Nanopore-based DNA sequencing in clinical microbiology: preliminary assessment of basic requirements

2018-08-01

Abstract excerpt

<h4>Aim</h4> Identify basic requirements for a metagenomic nanopore sequencing protocol permitting frequent application in a clinical microbiology daily routine diagnostic setting. <h4>Background</h4> Nanopore sequencing with the Oxford Nanopore Technologies MinION device has a potential to markedly improve clinical diagnosis of infections. Reports have emerged recently that it may provide direct-from-clinical-s...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 6e4d3f01-25c8-5ab6-85c5-945df6570833
DOI: 10.1101/382580

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Nanopore-based DNA sequencing in clinical microbiology: preliminary assessment of basic requirementsDOI 10.1101/382580Read

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devicesSemantic proximity Read

Preliminary assessment of nanopore-based metagenomic sequencing for the diagnosis of prosthetic joint infectionSemantic proximity Read

Application of Nanopore Sequencing in the Diagnosis and Treatment of Pulmonary InfectionsSemantic proximity Read

Performance and Practicality of 16S Nanopore Sequencing for Routine Bacterial Identification in Clinical SamplesSemantic proximity Read

DNA extraction of microbial DNA directly from infected tissue: an optimized protocol for use in nanopore sequencingSemantic proximity Read

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION <sup>TM</sup> nanopore sequencerSemantic proximity Read

Improving the Diagnosis of Bacterial Infections: Evaluation of 16S rRNA Nanopore Metagenomics in Culture-Negative SamplesSemantic proximity Read

Detection of pathogens and antimicrobial resistant genes from urine within 5 hours using Nanopore sequencingSemantic proximity Read

Nationwide multicentre study of Nanopore long-read sequencing for 16S rRNA-species identificationSemantic proximity Read

Comparative Performance of Portable DNA Extraction Protocols and Bioinformatics Workflows for Rapid Detection of Pathogens and Antimicrobial Resistance Using Oxford Nanopore SequencingSemantic proximity Read

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genesSemantic proximity Read

Assessing Nanopore Sequencing for Clinical Diagnostics: a Comparison of Next-Generation Sequencing (NGS) Methods for Mycobacterium tuberculosisSemantic proximity Read