Article

LongAllele: a joint inference framework for allele-specific analysis on long-read bulk and single-cell RNA sequencing

2026-05-08

Abstract excerpt

Allele-specific analysis from RNA-seq is a powerful approach to characterize cis -regulatory effects. However, existing methods remain limited in both haplotype inference and allelic testing. Their haplotype-inference workflows separate variant calling, haplotype phasing, and read-haplotype assignment into sequential steps, failing to fully exploit within-read single-nucleotide variant (SNV) linkage information a...

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Literature Corpus work: 6df73f01-d8b2-5f56-a44f-473f323c1387
DOI: 10.64898/2026.05.05.722992

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