Article

Binning microbial genomes using deep learning

2018-12-10

Abstract excerpt

Identification and reconstruction of microbial species from metagenomics wide genome sequencing data is an important and challenging task. Current existing approaches rely on gene or contig co-abundance information across multiple samples and k -mer composition information in the sequences. Here we use recent advances in deep learning to develop an algorithm that uses variational autoencoders to encode co-abundan...

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Literature Corpus work: 4d971061-9b6c-5f47-858d-2a3727a0d7a8
DOI: 10.1101/490078

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