Article

DeepMicrobes: taxonomic classification for metagenomics with deep learning

2019-07-08

Abstract excerpt

Taxonomic classification is a crucial step for metagenomics applications including disease diagnostics, microbiome analyses, and outbreak tracing. Yet it is unknown what deep learning architecture can capture microbial genome-wide features relevant to this task. We report DeepMicrobes ( https://github.com/MicrobeLab/DeepMicrobes ), a computational framework that can perform large-scale training on > 10,000 RefSeq...

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Literature Corpus work: 869161b9-4aa1-5e73-8c8d-e3866c35c83c
DOI: 10.1101/694851

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