Article

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun meta-genomic data

2017-08-08

Abstract excerpt

<h4>Motivation</h4> Analysis toolkits for shotgun metagenomic data achieve strain-level characterization of complex microbial communities by capturing intra-species gene content variation. Yet, these tools are hampered by the extent of reference genomes that are far from covering all microbial variability, as many species are still not sequenced or have only few strains available. Binning co-abundant genes obtain...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 4d78bd0f-4213-54e1-9d6f-0c60da866785
DOI: 10.1101/173203

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun meta-genomic dataDOI 10.1101/173203Read

Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2Semantic proximity Read

GAIA: an integrated metagenomics suiteSemantic proximity Read

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.Semantic proximity Read

MAGinator enables strain-level quantification of <i>de novo</i> MAGsSemantic proximity Read

Reference genome-independent taxonomic profiling of microbiomes with mOTUs3Semantic proximity Read

PanGIA: A Metagenomics Analytical Framework for Routine Biosurveillance and Clinical Pathogen DetectionSemantic proximity Read

Metagenome-assembled genomes from a population-based cohort uncover novel gut species and within-species diversity, revealing prevalent disease associationsSemantic proximity Read

ReprDB and panDB: minimalist databases with maximal microbial representationSemantic proximity Read

Different evolutionary trends form the twilight zone of the bacterial pan-genomeSemantic proximity Read

Autometa: Automated extraction of microbial genomes from individual shotgun metagenomesSemantic proximity Read

PATO: Pangenome Analysis ToolkitSemantic proximity Read

High resolution shotgun metagenomics: the more data, the better?Semantic proximity Read