Article

CompleteBin: A transformer-based framework unlocks microbial dark matter through improved short contig binning

2025-04-24

Abstract excerpt

Metagenomic binning is crucial for reconstructing microbial genomes from metagenomic sequencing samples. However, existing tools struggle in complex communities where short, low-abundance contigs predominate, thereby limiting the recovery of complete metagenome-assembled genomes (MAGs) and the identification of novel functions. Here, we introduce CompleteBin, a Transformer-based framework that integrates contig se...

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Literature Corpus work: aa012a84-d14b-5631-98bb-1083a3cdffc1
DOI: 10.1101/2025.04.20.649691

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