Article

High resolution shotgun metagenomics: the more data, the better?

2022-04-19

Abstract excerpt

In shotgun metagenomics (SM), the state of the art bioinformatic workflows are referred to as high resolution shotgun metagenomics (HRSM) and require intensive computing and disk storage resources. While the increase in data output of the latest iteration of high throughput DNA sequencing systems can allow for unprecedented sequencing depth at a minimal cost, adjustments in HRSM workflows will be needed to properl...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: b8d5582f-aed5-54a5-b4cb-ef0e1a751891
DOI: 10.1101/2022.04.19.488797

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

High resolution shotgun metagenomics: the more data, the better?DOI 10.1101/2022.04.19.488797Read

Evaluating the information content of shallow shotgun metagenomicsSemantic proximity Read

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencingSemantic proximity Read

GAIA: an integrated metagenomics suiteSemantic proximity Read

Combining 16S rRNA gene variable regions enables high-resolution microbial community profilingSemantic proximity Read

METAHIT enables comprehensive and flexible genome-resolved microbiome analysis with metagenomic Hi-CSemantic proximity Read

Shotgun sequencing the microbial diversity of the Earth.Semantic proximity Read

Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2Semantic proximity Read

Implications of error-prone long-read whole-genome shotgun sequencing on characterizing reference microbiomesSemantic proximity Read

VirMake: a flexible and user-friendly pipeline for viral taxonomic and functional characterisation from shotgun metagenomic sequencing dataSemantic proximity Read

Automated and accurate estimation of gene family abundance from shotgun metagenomesSemantic proximity Read

MAGinator enables strain-level quantification of <i>de novo</i> MAGsSemantic proximity Read

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun meta-genomic dataSemantic proximity Read