Article

KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences

2025-02-28

Abstract excerpt

The integration of many disparate forms of data is essential for understanding the microbial world and its interaction with the environment and human health. Doing so is particularly challenging in the context of microbe-host and microbe-microbe interactions that contribute to health or environmental outcomes. There are often thousands of relevant microbial species, and millions of interactions among those microbe...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 2dbdc44f-5f9a-5e6b-a11f-40f140807f1c
DOI: 10.1101/2025.02.24.639989

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial SciencesDOI 10.1101/2025.02.24.639989Read

Characterization of methods for mechanistic inference of the gut microbiome in diseaseSemantic proximity Read

MetagenomicKG: a knowledge graph for metagenomic applicationsSemantic proximity Read

Hypothesizing mechanistic links between microbes and disease using knowledge graphsSemantic proximity Read

Gene-centric metagenomic analyses reveal microbiome functional insights into diseasesSemantic proximity Read

MicroPhenoDB Associates Metagenomic Data with Pathogenic Microbes, Microbial Core Genes, and Human Disease PhenotypesSemantic proximity Read

MicroPhenoDB Associates Metagenomic Data with Pathogenic Microbes, Microbial Core Genes, and Human Disease Phenotypes.Semantic proximity Read

KODA: An Agentic Framework for KEGG Orthology-Driven Discovery of Antimicrobial Drug Targets in Gut MicrobiomeSemantic proximity Read

Knowledge Graph-Based Framework for Detecting Horizontal Gene Transfer Events Driving Antimicrobial ResistanceSemantic proximity Read

Complete genome-derived metabolic interactions reveal impact of gut ecology on human healthSemantic proximity Read

Comparative metagenomics using pan-metagenomic graphsSemantic proximity Read

A novel graph theoretical approach for modeling microbiomes and inferring microbial ecological relationships.Semantic proximity Read

Understanding Ecological Systems Using Knowledge Graphs: An Application to Highly Pathogenic Avian InfluenzaSemantic proximity Read